SNP Profiles of PA 56 [PER] View Data

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_Input profile	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
1._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
2._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
3._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
4._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
5._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
6._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
7._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
8._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
9._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
10._RUQ_32	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
12._RUQ_32	__	__	CT	CC	__	__	CT	__	CC	__	__	TT	CC	__
13._RUQ_32	__	__	__	CC	__	__	CT	__	__	__	__	__	__	__
14._-	AA	AC	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
1._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
2._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
3._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
4._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	__	CC	GG
5._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
6._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
7._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
8._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
9._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	__	GG
10._RUQ_32	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
11._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
12._RUQ_32	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG
13._RUQ_32	__	__	GG	TT	__	__	__	__	__	__	__	__	__	GG
14._-	TT	CC	GG	CG	__	GG	GG	GG	AA	GG	AA	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
1._NA	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
2._NA	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
3._NA	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
4._NA	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
5._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
6._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
7._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
8._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
9._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
10._RUQ_32	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
11._PA_56_[PER]	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
12._RUQ_32	__	__	__	GG	CG	CC	AG	GG	__	__	GG	TT	__	__
13._RUQ_32	__	__	__	__	CG	__	AG	__	__	__	__	__	__	__
14._-	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	GG	AA	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
1._NA	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
2._NA	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
3._NA	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
4._NA	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
5._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
6._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
7._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
8._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
9._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
10._RUQ_32	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
11._PA_56_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
12._RUQ_32	GG	TT	__	__	GG	__	__	__	__	__	__	CT	CC	__
13._RUQ_32	__	__	__	__	GG	__	__	__	__	__	__	__	__	__
14._-	CC	__	GG	__	GG	AA	GG	__	GG	AG	CC	AG	GG	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
1._NA	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
2._NA	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
3._NA	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
4._NA	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
5._PA_56_[PER]	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
6._PA_56_[PER]	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
7._PA_56_[PER]	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
8._PA_56_[PER]	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
9._PA_56_[PER]	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
10._RUQ_32	__	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__
11._PA_56_[PER]	__	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__
12._RUQ_32	TT	__	CC	CC	CT	AC	__	GG	CC	AG	GT	GG	AG	__
13._RUQ_32	__	GG	__	__	__	__	__	__	CC	AG	__	GG	AG	__
14._-	AA	GG	GG	GG	AG	AC	GG	GG	CC	AG	AC	CC	AG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
1._NA	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
2._NA	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
3._NA	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
4._NA	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
5._PA_56_[PER]	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
6._PA_56_[PER]	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
7._PA_56_[PER]	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
8._PA_56_[PER]	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
9._PA_56_[PER]	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
10._RUQ_32	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT
11._PA_56_[PER]	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT
12._RUQ_32	__	__	__	__	__	__	__	__	AC	CG	__	__	AA	TT
13._RUQ_32	__	AA	__	__	__	__	__	__	AA	CG	__	__	AA	__
14._-	__	__	AG	AC	AG	AC	AA	__	AC	CG	GG	AT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._NA	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
2._NA	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._NA	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._NA	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
6._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
7._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
8._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
9._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
10._RUQ_32	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
11._PA_56_[PER]	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
12._RUQ_32	__	__	__	AA	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X
13._RUQ_32	__	CC	__	__	__	__	TT	__	__	__	X_X	X_X	X_X	X_X
14._-	AG	__	AG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: PA_56_[PER] NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

1._PA_56_[PER] NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

2._PA_56_[PER] NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._PA_56_[PER] NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._PA_56_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

6._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

7._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

8._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_56_[PER]

96.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._PA_56_[PER] -

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240